darsia.TracerAnalysis#

class TracerAnalysis(baseline, config, update_setup=False)[source]#

Manager wiring a baseline plus config into a tracer-concentration pipeline.

Subclass and implement define_tracer_analysis to specify the signal-to-concentration conversion.

Constructor for TracerAnalysis.

Parameters:

Methods

`batch_analysis`(images, **kwargs)	Standard batch analysis.
`define_tracer_analysis`()	The main purpose of this routine is to define self.tracer_analysis, which lies at the heart of this class.
`determine_tracer`([return_volume])	Extract tracer from currently loaded image, based on a reference image.
`load_and_process_image`(path)	Load image for further analysis.
`single_image_analysis`(img, **kwargs)	Standard workflow to analyze CO2 phases.

Attributes

`config`	Config dict from file.
`width`	Physical width of image.
`height`	Physical height of image.
`origin`	Physical origin of origin voxel.
`processed_baseline_images`	List of corrected baseline images.
`drift_correction`	Drift correction wrt.
`deformation_correction`	Local deformation correction wrt.
`color_correction`	Color correction based on reference colors.
`translation_correction`	Translation correction based on fixed absolute translation.
`curvature_correction`	Curvature correction.
`uncorrected_base`	Baseline image stored as physical image but without corrections.
`drift_corrected_base`	Baseline image corrected for drift only.

abstractmethod define_tracer_analysis()[source]#: The main purpose of this routine is to define self.tracer_analysis, which lies at the heart of this class. It is supposed to determine tracers from image differences. Since the choice of a suitable color channel etc. may heavily depend on the situation, this method is abstract and has to be overwritten in each specific situation.

determine_tracer(return_volume=False)[source]#

Extract tracer from currently loaded image, based on a reference image.

Parameters:

return_volumebool: Flag controlling whether the volume of the fluid in the porous geometry is returned.

Returns: