darsia.ConcentrationAnalysisBase#

class ConcentrationAnalysisBase(baseline, config, update_setup=False)[source]#

Base analysis class providing general tools to perform analysis based on darsia.ConcentrationAnalysis (and children).

Constructor.

Sets up fixed config file required for preprocessing.

Parameters:

baselinestr, Path or list of such: Baseline images, used to set up analysis tools and cleaning tools.
configstr or Path: Path to config dict.
update_setupbool: Flag controlling whether cache in setup routines is emptied.

Methods

`batch_analysis`(images, **kwargs)	Standard batch analysis.
`load_and_process_image`(path)	Load image for further analysis.
`single_image_analysis`(img, **kwargs)	Standard workflow to analyze CO2 phases.

Attributes

`config`	Config dict from file.
`width`	Physical width of image.
`height`	Physical height of image.
`origin`	Physical origin of origin voxel.
`processed_baseline_images`	List of corrected baseline images.
`drift_correction`	Drift correction wrt.
`deformation_correction`	Local deformation correction wrt.
`color_correction`	Color correction based on reference colors.
`translation_correction`	Translation correction based on fixed absolute translation.
`curvature_correction`	Curvature correction.
`uncorrected_base`	Baseline image stored as physical image but without corrections.
`drift_corrected_base`	Baseline image corrected for drift only.