User guide

The user guide explains the concepts behind DarSIA and how its pieces fit together. It complements the runnable Examples and the per-object API reference.

Note

These pages are first drafts. The API reference and example gallery are complete; the narrative below is being expanded and reviewed.

Foundations

• The image data model
• Coordinate systems
• Reading images

Preparing images

• Colour correction
• Illumination correction
• Shape correction
• Restoration

Extracting information

• Segmentation
• Image registration
• Concentration analysis
• Signal models
• Distances

Putting it together

• Interactive assistants
• The workflow system
• The graphical interface