darsia.SimpleRunAnalysis#

class SimpleRunAnalysis(geometry, colors={})[source]#

Customized class for analyzing a single run of the FFUM experiment.

Initialize the SimpleRunAnalysis class.

Parameters:

geometrydarsia.Geometry: Geometry for integration of mass.
colorsdict, optional: Dictionary specifying colors for plotting. Keys are ‘aqueous’, ‘gaseous’, and ‘mass’. Values are RGB tuples. Defaults to None, which uses preset colors.

Methods

`clean`(threshold)	Remove faulty data from tracked time series data.
`load`(path)	Load the multiphase time series data from a csv file.
`plot_contour_concentration`(img, ...[, thickness])
`plot_contour_mass`(img, mass_analysis_result, ...)	Customized contour plot of the mass analysis.
`plot_contour_saturation`(img, ...[, thickness])
`plot_contour_saturation_concentration`(img, ...)
`plot_contour_signal`(img, ...)	Customized contour plot of the signal analysis.
`plot_dissolved_CO2`(background, img, ...[, ...])
`plot_gas`(background, img, ...[, thickness])
`plot_mass_over_time`(path, **kwargs)	Plot the time series mass data of gaseous and aqueous phases.
`plot_pure_contour_signal`(img, ...[, thickness])
`plot_result`(mass_analysis_result, component, ...)	Plot the result of the mass analysis for a specific component.
`plot_simple_contour_signal`(img, ...[, thickness])
`plot_volume_over_time`(path, **kwargs)	Plot the time series volume of gaseous and aqueous phases.
`reset`()	Reset the tracking time series data to empty lists.
`save`(path)	Save the multiphase time series data to a csv file.
`track`(mass_analysis_result[, exact_mass])	Track the mass analysis result and add to time series data.

Attributes

`geometry`	Geometry for integration of mass.
`color_aq`	Color for aqueous phase in plots.
`color_g`	Color for gaseous phase in plots.
`color_mass`	Color for mass in plots.
`data`	Time series data for multiphase mass and volume tracking.

plot_contour_mass(img, mass_analysis_result, path)[source]#

Customized contour plot of the mass analysis.

Parameters:

imgdarsia.Image: The image on which to plot the contours.
mass_analysis_resultdarsia.MassAnalysisResults: The mass analysis results containing the component data.
pathPath: Path to save the contour plot image.

Returns:

plot_contour_signal(img, mass_analysis_result, path)[source]#

Customized contour plot of the signal analysis.

Parameters:

imgdarsia.Image: The image on which to plot the contours.
mass_analysis_resultdarsia.MassAnalysisResults: The mass analysis results containing the component data.
pathPath: Path to save the contour plot image.

Returns:

track(mass_analysis_result, exact_mass=None)[source]#

Track the mass analysis result and add to time series data.

Parameters:

mass_analysis_resultdarsia.MassAnalysisResults: The mass analysis results containing the component data.
exact_massfloat: The exact injected mass at the time of the analysis result.