darsia.CO2Analysis#

class CO2Analysis(baseline, config, update_setup=False)[source]#

Bases: ABC, ConcentrationAnalysisBase

General setup for an image analysis of time series aiming at analyzing CO2 evolution. This class inherits from darsia.TracerAnalysis.

Constructor for two-component analysis, where the two specific components are identified with CO2(g) and CO2 saturated water. Pure water will be treated as neutral (third) phase.

Parameters:

baselinestr, Path or list of such: See darsia.AnalysisBase.
configstr or Path: See darsia.AnalysisBase.
update_setupbool: See darsia.AnalysisBase.

Methods

`batch_analysis`(images, **kwargs)	Standard batch analysis.
`define_co2_analysis`()	Empty method which should define self.co2_analysis of type darsia.ConcentrationAnalysis.
`define_co2_gas_analysis`()	Empty method which should define self.co2_gas_analysis of type darsia.ConcentrationAnalysis.
`determine_co2`()	Extract CO2 from currently loaded image, based on a reference image.
`determine_co2_gas`()	Extract CO2(g) from currently loaded image, based on a reference image.
`load_and_process_image`(path)	Load image for further analysis.
`single_image_analysis`(img, **kwargs)	Standard workflow to analyze CO2 phases.

Attributes

`config`	Config dict from file.
`width`	Physical width of image.
`height`	Physical height of image.
`origin`	Physical origin of origin voxel.
`processed_baseline_images`	List of corrected baseline images.
`drift_correction`	Drift correction wrt.
`deformation_correction`	Local deformation correction wrt.
`color_correction`	Color correction based on reference colors.
`translation_correction`	Translation correction based on fixed absolute translation.
`curvature_correction`	Curvature correction.
`uncorrected_base`	Baseline image stored as physical image but without corrections.
`drift_corrected_base`	Baseline image corrected for drift only.

abstractmethod define_co2_analysis()[source]#: Empty method which should define self.co2_analysis of type darsia.ConcentrationAnalysis.

abstractmethod define_co2_gas_analysis()[source]#: Empty method which should define self.co2_gas_analysis of type darsia.ConcentrationAnalysis.

determine_co2()[source]#

Extract CO2 from currently loaded image, based on a reference image.

Returns:

darsia.Image: Binary image of spatial CO2 distribution.

determine_co2_gas()[source]#

Extract CO2(g) from currently loaded image, based on a reference image.

Returns:

darsia.Image: Binary image of spatial CO2(g) distribution.